HL_9O3W_068

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

9O3W|1|L5|G|4910, 9O3W|1|L5|A|4911, 9O3W|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9O3W_068 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.0696

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9O3W|1|L5|G|4907
9O3W|1|L5|G|4908
9O3W|1|L5|A|4909
9O3W|1|L5|G|4910
9O3W|1|L5|A|4911
9O3W|1|L5|G|4912
9O3W|1|L5|G|4913
9O3W|1|L5|C|4914

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13