HL_9OFV_005

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

9OFV|1|f|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_005 not in the Motif Atlas

Geometric match to HL_8P9A_117

Geometric discrepancy: 0.0778

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9OFV|1|f|U|194
9OFV|1|f|U|195
9OFV|1|f|G|196
9OFV|1|f|G|197
9OFV|1|f|A|198
9OFV|1|f|A|199
9OFV|1|f|C|200
9OFV|1|f|A|201

Current chains

Chain f

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain R

Large ribosomal subunit protein eL32

Chain l

Large ribosomal subunit protein uL4A