HL_9OFV_008

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

9OFV|1|f|G|283, 9OFV|1|f|A|284, 9OFV|1|f|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_008 not in the Motif Atlas

Geometric match to HL_8P9A_120

Geometric discrepancy: 0.0732

The information below is about HL_8P9A_120

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9OFV|1|f|U|278
9OFV|1|f|U|279
9OFV|1|f|U|280
9OFV|1|f|G|281
9OFV|1|f|G|282
9OFV|1|f|G|283
9OFV|1|f|A|284
9OFV|1|f|A|285
9OFV|1|f|U|286
9OFV|1|f|G|287

Current chains

Chain f

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L28

Chain b

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A