HL_9OFV_020
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9OFV|1|f|U|879, 9OFV|1|f|A|883, 9OFV|1|f|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_020 not in the Motif Atlas
- Geometric match to HL_8CRE_019
- Geometric discrepancy: 0.0481
- The information below is about HL_8CRE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9OFV|1|f|A|876
9OFV|1|f|C|877
9OFV|1|f|G|878
9OFV|1|f|U|879
9OFV|1|f|G|880
9OFV|1|f|C|881
9OFV|1|f|A|882
9OFV|1|f|A|883
9OFV|1|f|A|884
9OFV|1|f|U|885
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 1
- CAT-tailed nascent peptide
- Chain 3
- 60S ribosomal protein L17-A
- Chain W
- 60S ribosomal protein L37-A
- Chain k
- Large ribosomal subunit protein uL3
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