HL_9OFV_021

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9OFV|1|f|A|913, 9OFV|1|f|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_021 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.0661

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9OFV|1|f|G|910
9OFV|1|f|C|911
9OFV|1|f|G|912
9OFV|1|f|A|913
9OFV|1|f|A|914
9OFV|1|f|A|915
9OFV|1|f|G|916
9OFV|1|f|A|917
9OFV|1|f|C|918

Current chains

Chain f

25S rRNA

Nearby chains

Chain W

60S ribosomal protein L37-A

Chain j

60S ribosomal protein L2-A