HL_9OFV_022

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9OFV|1|f|C|959, 9OFV|1|f|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_022 not in the Motif Atlas

Geometric match to HL_4V9F_026

Geometric discrepancy: 0.3734

The information below is about HL_4V9F_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9OFV|1|f|C|958
9OFV|1|f|C|959
9OFV|1|f|U|960
9OFV|1|f|C|961
9OFV|1|f|A|962
9OFV|1|f|G|963

Current chains

Chain f

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L28

Chain O

Large ribosomal subunit protein eL29

Chain b

60S ribosomal protein L42-A