HL_9OFV_023

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

9OFV|1|f|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_023 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.174

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9OFV|1|f|C|1023
9OFV|1|f|G|1024
9OFV|1|f|A|1025
9OFV|1|f|A|1026
9OFV|1|f|A|1027
9OFV|1|f|U|1028
9OFV|1|f|G|1029

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain s

Large ribosomal subunit protein uL5A