HL_9OFV_024

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9OFV|1|f|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_024 not in the Motif Atlas

Geometric match to HL_8CRE_023

Geometric discrepancy: 0.1131

The information below is about HL_8CRE_023

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9OFV|1|f|C|1076
9OFV|1|f|U|1077
9OFV|1|f|U|1078
9OFV|1|f|A|1079
9OFV|1|f|A|1080
9OFV|1|f|U|1081
9OFV|1|f|U|1082
9OFV|1|f|G|1083

Current chains

Chain f

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L21-A

Chain O

Large ribosomal subunit protein eL29

Chain m

Large ribosomal subunit protein uL18