HL_9OFV_035

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

9OFV|1|f|U|1606, 9OFV|1|f|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_035 not in the Motif Atlas

Geometric match to HL_8CRE_034

Geometric discrepancy: 0.0874

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9OFV|1|f|G|1599
9OFV|1|f|U|1600
9OFV|1|f|U|1601
9OFV|1|f|A|1602
9OFV|1|f|A|1603
9OFV|1|f|G|1604
9OFV|1|f|A|1605
9OFV|1|f|U|1606
9OFV|1|f|U|1607
9OFV|1|f|C|1608

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A

Chain T

60S ribosomal protein L34-A

Chain b0

60S ribosomal protein L25