HL_9OFV_036

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_036 not in the Motif Atlas

Geometric match to HL_8CRE_035

Geometric discrepancy: 0.0693

The information below is about HL_8CRE_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9OFV|1|f|G|1634
9OFV|1|f|G|1635
9OFV|1|f|U|1636
9OFV|1|f|A|1637
9OFV|1|f|A|1638
9OFV|1|f|C|1639

Current chains

Chain f

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L27-A

Chain T

60S ribosomal protein L34-A