HL_9OFV_038

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_038 not in the Motif Atlas

Geometric match to HL_8P9A_149

Geometric discrepancy: 0.1073

The information below is about HL_8P9A_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9OFV|1|f|G|1719
9OFV|1|f|U|1720
9OFV|1|f|U|1721
9OFV|1|f|U|1722
9OFV|1|f|A|1723
9OFV|1|f|U|1724
9OFV|1|f|C|1725

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A

Chain c

60S ribosomal protein L43-A