HL_9OFV_039

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

9OFV|1|f|C|1762, 9OFV|1|f|U|1764

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_039 not in the Motif Atlas

Geometric match to HL_8P9A_150

Geometric discrepancy: 0.3665

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9OFV|1|f|C|1759
9OFV|1|f|A|1760
9OFV|1|f|C|1761
9OFV|1|f|C|1762
9OFV|1|f|U|1763
9OFV|1|f|U|1764
9OFV|1|f|U|1765
9OFV|1|f|G|1766

Current chains

Chain f

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L19-A

Chain 8

60S ribosomal protein L22-A

Chain v

Ribosome quality control complex subunit 1