HL_9OFV_055

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_055 not in the Motif Atlas

Geometric match to HL_8CRE_055

Geometric discrepancy: 0.1153

The information below is about HL_8CRE_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9OFV|1|f|A|2673
9OFV|1|f|A|2674
9OFV|1|f|C|2675
9OFV|1|f|A|2676
9OFV|1|f|G|2677
9OFV|1|f|A|2678
9OFV|1|f|A|2679
9OFV|1|f|A|2680
9OFV|1|f|U|2681

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain s

Large ribosomal subunit protein uL5A

Chain y

Transfer RNA; tRNA