HL_9OFV_058

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_058 not in the Motif Atlas

Geometric match to HL_8CRE_058

Geometric discrepancy: 0.0903

The information below is about HL_8CRE_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9OFV|1|f|U|2744
9OFV|1|f|G|2745
9OFV|1|f|A|2746
9OFV|1|f|A|2747
9OFV|1|f|A|2748
9OFV|1|f|G|2749

Current chains

Chain f

25S rRNA

Nearby chains

Chain 7

60S ribosomal protein L21-A

Chain b

60S ribosomal protein L42-A

Chain m

Large ribosomal subunit protein uL18