HL_9OFV_060
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_060 not in the Motif Atlas
- Geometric match to HL_8P9A_172
- Geometric discrepancy: 0.1127
- The information below is about HL_8P9A_172
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9OFV|1|f|C|2840
9OFV|1|f|G|2841
9OFV|1|f|U|2842
9OFV|1|f|U|2843
9OFV|1|f|C|2844
9OFV|1|f|A|2845
9OFV|1|f|U|2846
9OFV|1|f|A|2847
9OFV|1|f|G|2848
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain r
- Large ribosomal subunit protein uL16
- Chain x
- Transfer RNA; tRNA
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