HL_9OGY_008
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9OGY|1|2|C|450, 9OGY|1|2|G|451
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OGY_008 not in the Motif Atlas
- Homologous match to HL_9PN5_086
- Geometric discrepancy: 0.1868
- The information below is about HL_9PN5_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.3
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9OGY|1|2|C|441
9OGY|1|2|C|442
9OGY|1|2|U|443
9OGY|1|2|G|444
9OGY|1|2|A|445
9OGY|1|2|G|446
9OGY|1|2|A|447
9OGY|1|2|A|448
9OGY|1|2|A|449
9OGY|1|2|C|450
9OGY|1|2|G|451
9OGY|1|2|G|452
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain H
- 40S ribosomal protein S6
- Chain J
- 40S ribosomal protein S8
- Chain Z
- eS24
Coloring options: