HL_9OGY_012
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OGY_012 not in the Motif Atlas
- Homologous match to HL_9H3G_089
- Geometric discrepancy: 0.2763
- The information below is about HL_9H3G_089
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68749.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9OGY|1|2|A|569
9OGY|1|2|C|570
9OGY|1|2|U|571
9OGY|1|2|U|572
9OGY|1|2|U|573
9OGY|1|2|A|574
9OGY|1|2|A|575
9OGY|1|2|A|576
9OGY|1|2|U|577
9OGY|1|2|C|578
9OGY|1|2|C|579
9OGY|1|2|U|580
9OGY|1|2|U|581
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain Z
- eS24
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