HL_9OGY_018

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9OGY|1|2|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OGY_018 not in the Motif Atlas

Homologous match to HL_9PN5_097

Geometric discrepancy: 0.415

The information below is about HL_9PN5_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9OGY|1|2|G|1054
9OGY|1|2|A|1055
9OGY|1|2|U|1056
9OGY|1|2|C|1057
9OGY|1|2|A|1058
9OGY|1|2|G|1059
9OGY|1|2|A|1060
9OGY|1|2|U|1061
9OGY|1|2|A|1062
9OGY|1|2|C|1063
9OGY|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein S14