HL_9OGY_028

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9OGY|1|2|U|1621, 9OGY|1|2|U|1622, 9OGY|1|2|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|A|1614
9OGY|1|2|U|1615
9OGY|1|2|U|1616
9OGY|1|2|G|1617
9OGY|1|2|C|1618
9OGY|1|2|A|1619
9OGY|1|2|A|1620
9OGY|1|2|U|1621
9OGY|1|2|U|1622
9OGY|1|2|A|1623
9OGY|1|2|U|1624
9OGY|1|2|U|1625

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain e

eS29