HL_9OJM_002
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCCCAUACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OJM_002 not in the Motif Atlas
- Geometric match to HL_5J8B_109
- Geometric discrepancy: 0.098
- The information below is about HL_5J8B_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9OJM|1|5|G|31
9OJM|1|5|C|32
9OJM|1|5|C|33
9OJM|1|5|C|34
9OJM|1|5|A|35
9OJM|1|5|U|36
9OJM|1|5|A|37
9OJM|1|5|C|38
9OJM|1|5|C|39
Current chains
- Chain 5
- RNA (71-MER)
Nearby chains
- Chain 6
- mRNA (5'-R(P*AP*UP*GP*U)-3')
- Chain 7
- Translation initiation factor IF-2, mitochondrial
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- Small ribosomal subunit protein uS9m
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