HL_9OJM_021
3D structure
- PDB id
- 9OJM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial 28S PIC with tRNA and mtIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AUGAAACUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OJM_021 not in the Motif Atlas
- Geometric match to HL_4YCP_003
- Geometric discrepancy: 0.1727
- The information below is about HL_4YCP_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9OJM|1|A|A|1399
9OJM|1|A|U|1400
9OJM|1|A|G|1401
9OJM|1|A|A|1402
9OJM|1|A|A|1403
9OJM|1|A|A|1404
9OJM|1|A|C|1405
9OJM|1|A|U|1406
9OJM|1|A|U|1407
Current chains
- Chain A
- 12S mitochondrial RNA
Nearby chains
- Chain K
- 28S ribosomal protein S14, mitochondrial
- Chain Z
- Small ribosomal subunit protein mS33
Coloring options: