HL_9P72_121

3D structure

PDB id

9P72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9P72|1|S2|C|1419, 9P72|1|S2|G|1420, 9P72|1|S2|A|1421, 9P72|1|S2|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9P72_121 not in the Motif Atlas

Homologous match to HL_9PN5_105

Geometric discrepancy: 0.5499

The information below is about HL_9PN5_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.5

Basepair signature

cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

9P72|1|S2|C|1416
9P72|1|S2|C|1417
9P72|1|S2|C|1418
9P72|1|S2|C|1419
9P72|1|S2|G|1420
9P72|1|S2|A|1421
9P72|1|S2|G|1422
9P72|1|S2|C|1423
9P72|1|S2|G|1424

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

40S ribosomal protein S19