HL_9P8B_089
3D structure
- PDB id
- 9P8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF1A-A/T-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9P8B_089 not in the Motif Atlas
- Homologous match to HL_9AXU_071
- Geometric discrepancy: 0.1746
- The information below is about HL_9AXU_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9P8B|1|L8|C|47
9P8B|1|L8|A|48
9P8B|1|L8|G|49
9P8B|1|L8|C|50
9P8B|1|L8|U|51
9P8B|1|L8|A|52
9P8B|1|L8|G|53
9P8B|1|L8|C|54
9P8B|1|L8|PSU|55
9P8B|1|L8|G|56
Current chains
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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