HL_9P8I_087
3D structure
- PDB id
- 9P8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.89 Å
Loop
- Sequence
- GUAGGGUAUC
- Length
- 10 nucleotides
- Bulged bases
- 9P8I|1|Pt|G|18, 9P8I|1|Pt|G|19, 9P8I|1|Pt|U|20|||A
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9P8I_087 not in the Motif Atlas
- Homologous match to HL_1F7U_001
- Geometric discrepancy: 0.2348
- The information below is about HL_1F7U_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_55043.2
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
9P8I|1|Pt|G|12
9P8I|1|Pt|U|13
9P8I|1|Pt|A|14
9P8I|1|Pt|G|15
9P8I|1|Pt|G|18
9P8I|1|Pt|G|19
9P8I|1|Pt|U|20|||A
9P8I|1|Pt|A|21
9P8I|1|Pt|U|22
9P8I|1|Pt|C|23
Current chains
- Chain Pt
- P site tRNA [Homo sapiens]
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: