HL_9P8I_114

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

9P8I|1|S2|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|G|1245
9P8I|1|S2|A|1246
9P8I|1|S2|C|1247
9P8I|1|S2|B8N|1248
9P8I|1|S2|C|1249
9P8I|1|S2|A|1250
9P8I|1|S2|A|1251
9P8I|1|S2|C|1252
9P8I|1|S2|A|1253
9P8I|1|S2|C|1254

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29