HL_9PII_030
3D structure
- PDB id
- 9PII (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PII_030 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.096
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9PII|1|Z|G|31
9PII|1|Z|5MC|32
9PII|1|Z|U|33
9PII|1|Z|C|34
9PII|1|Z|A|35
9PII|1|Z|U|36
9PII|1|Z|A|37
9PII|1|Z|A|38
9PII|1|Z|C|39
Current chains
- Chain Z
- P-site tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Small ribosomal subunit protein uS9
- Chain X
- mRNA
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