HL_9PJ7_031

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGCUGGUAG

Length

10 nucleotides

Bulged bases

9PJ7|1|C|U|17, 9PJ7|1|C|G|18, 9PJ7|1|C|G|19, 9PJ7|1|C|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_031 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1635

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9PJ7|1|C|C|13
9PJ7|1|C|A|14
9PJ7|1|C|G|15
9PJ7|1|C|C|16
9PJ7|1|C|U|17
9PJ7|1|C|G|18
9PJ7|1|C|G|19
9PJ7|1|C|U|20
9PJ7|1|C|A|21
9PJ7|1|C|G|22

Current chains

Chain C

initiator tRNA Met (76-MER)

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

50S ribosomal protein L5