HL_9PJ7_047

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

9PJ7|1|a|G|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_047 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1316

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9PJ7|1|a|G|499
9PJ7|1|a|G|500
9PJ7|1|a|A|501
9PJ7|1|a|C|502
9PJ7|1|a|C|503
9PJ7|1|a|A|504
9PJ7|1|a|C|505
9PJ7|1|a|C|506

Current chains

Chain a

23S rRNA

Nearby chains