HL_9PJ7_086

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9PJ7|1|a|G|2432

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_086 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0974

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9PJ7|1|a|C|2430
9PJ7|1|a|U|2431
9PJ7|1|a|G|2432
9PJ7|1|a|OMG|2433
9PJ7|1|a|G|2434
9PJ7|1|a|G|2435
9PJ7|1|a|C|2436
9PJ7|1|a|G|2437
9PJ7|1|a|G|2438

Current chains

Chain a

23S rRNA

Nearby chains

Chain C

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27