HL_9PJ7_093

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGCUCAUAG

Length

9 nucleotides

Bulged bases

9PJ7|1|a|A|2660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_093 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.3041

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9PJ7|1|a|C|2653
9PJ7|1|a|G|2654
9PJ7|1|a|C|2655
9PJ7|1|a|U|2656
9PJ7|1|a|C|2657
9PJ7|1|a|A|2658
9PJ7|1|a|U|2659
9PJ7|1|a|A|2660
9PJ7|1|a|G|2661

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain l

50S ribosomal protein L16