HL_9PJ9_032
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PJ9_032 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0764
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9PJ9|1|C|G|31
9PJ9|1|C|5MC|32
9PJ9|1|C|U|33
9PJ9|1|C|C|34
9PJ9|1|C|A|35
9PJ9|1|C|U|36
9PJ9|1|C|A|37
9PJ9|1|C|A|38
9PJ9|1|C|C|39
Current chains
- Chain C
- initiator tRNA Met
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain J
- 30S ribosomal protein S9
- Chain N
- 30S ribosomal protein S13
- Chain Y
- mRNA 32MF
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