HL_9PKG_068

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

U(PSU)UGGGUUU(PSU)A

Length

11 nucleotides

Bulged bases

9PKG|1|L5|U|4354

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|U|4352
9PKG|1|L5|PSU|4353
9PKG|1|L5|U|4354
9PKG|1|L5|G|4355
9PKG|1|L5|G|4356
9PKG|1|L5|G|4357
9PKG|1|L5|U|4358
9PKG|1|L5|U|4359
9PKG|1|L5|U|4360
9PKG|1|L5|PSU|4361
9PKG|1|L5|A|4362

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a