HL_9PR4_017

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

AAACAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PR4_017 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2368

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

9PR4|1|A|A|2319
9PR4|1|A|A|2320
9PR4|1|A|A|2321
9PR4|1|A|C|2322
9PR4|1|A|A|2323
9PR4|1|A|U|2324

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain O

39S ribosomal protein L17, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial