HL_9PR4_025

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUUAA(1MA)UAG

Length

9 nucleotides

Bulged bases

9PR4|1|A|U|2618

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PR4_025 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2213

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9PR4|1|A|C|2612
9PR4|1|A|U|2613
9PR4|1|A|U|2614
9PR4|1|A|A|2615
9PR4|1|A|A|2616
9PR4|1|A|1MA|2617
9PR4|1|A|U|2618
9PR4|1|A|A|2619
9PR4|1|A|G|2620

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial