HL_9PR4_028

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UUG(OMG)GGCGA

Length

9 nucleotides

Bulged bases

9PR4|1|A|G|2814

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PR4_028 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0906

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9PR4|1|A|U|2812
9PR4|1|A|U|2813
9PR4|1|A|G|2814
9PR4|1|A|OMG|2815
9PR4|1|A|G|2816
9PR4|1|A|G|2817
9PR4|1|A|C|2818
9PR4|1|A|G|2819
9PR4|1|A|A|2820

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial