HL_9PR4_040

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

UUAACACAAA

Length

10 nucleotides

Bulged bases

9PR4|1|B|U|13, 9PR4|1|B|C|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PR4_040 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1936

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9PR4|1|B|U|12
9PR4|1|B|U|13
9PR4|1|B|A|14
9PR4|1|B|A|15
9PR4|1|B|C|16
9PR4|1|B|A|18
9PR4|1|B|C|19
9PR4|1|B|A|20
9PR4|1|B|A|21
9PR4|1|B|A|23

Current chains

Chain B

mitochondrial tRNAVal

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain P

39S ribosomal protein L18, mitochondrial