HL_9PRD_021
3D structure
- PDB id
- 9PRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9PRD|1|A|A|2500, 9PRD|1|A|C|2501, 9PRD|1|A|C|2502, 9PRD|1|A|A|2506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9PRD_021 not in the Motif Atlas
- Geometric match to HL_9E6Q_045
- Geometric discrepancy: 0.0998
- The information below is about HL_9E6Q_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9PRD|1|A|U|2497
9PRD|1|A|U|2498
9PRD|1|A|U|2499
9PRD|1|A|A|2500
9PRD|1|A|C|2501
9PRD|1|A|C|2502
9PRD|1|A|A|2503
9PRD|1|A|A|2504
9PRD|1|A|A|2505
9PRD|1|A|A|2506
9PRD|1|A|A|2507
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain n
- Nascent polypeptide
Coloring options: