HL_9PSM_009

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

9PSM|1|A|A|1991, 9PSM|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PSM_009 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.2005

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9PSM|1|A|G|1988
9PSM|1|A|C|1989
9PSM|1|A|G|1990
9PSM|1|A|A|1991
9PSM|1|A|C|1992
9PSM|1|A|A|1993
9PSM|1|A|A|1994
9PSM|1|A|A|1995
9PSM|1|A|C|1996

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial