HL_9Q1Q_107

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9Q1Q|1|9|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|G|1245
9Q1Q|1|9|A|1246
9Q1Q|1|9|C|1247
9Q1Q|1|9|U|1248
9Q1Q|1|9|C|1249
9Q1Q|1|9|A|1250
9Q1Q|1|9|A|1251
9Q1Q|1|9|C|1252
9Q1Q|1|9|A|1253
9Q1Q|1|9|C|1254

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain PP

Small ribosomal subunit protein uS19

Chain QQ

Small ribosomal subunit protein uS9

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29