HL_9Q1S_072

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q1S_072 not in the Motif Atlas

Geometric match to HL_9PN5_105

Geometric discrepancy: 0.3707

The information below is about HL_9PN5_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.5

Basepair signature

cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

9Q1S|1|5|C|4775
9Q1S|1|5|G|4776
9Q1S|1|5|C|4777
9Q1S|1|5|C|4859
9Q1S|1|5|G|4860

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain O

Large ribosomal subunit protein uL13