HL_9Q1S_079
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|8|C|47
9Q1S|1|8|A|48
9Q1S|1|8|G|49
9Q1S|1|8|C|50
9Q1S|1|8|U|51
9Q1S|1|8|A|52
9Q1S|1|8|G|53
9Q1S|1|8|C|54
9Q1S|1|8|U|55
9Q1S|1|8|G|56
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- Large ribosomal subunit protein uL23
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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