HL_9Q1S_106
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9Q1S|1|9|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q1S_106 not in the Motif Atlas
- Homologous match to HL_9PN5_101
- Geometric discrepancy: 0.1337
- The information below is about HL_9PN5_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1S|1|9|G|1245
9Q1S|1|9|A|1246
9Q1S|1|9|C|1247
9Q1S|1|9|U|1248
9Q1S|1|9|C|1249
9Q1S|1|9|A|1250
9Q1S|1|9|A|1251
9Q1S|1|9|C|1252
9Q1S|1|9|A|1253
9Q1S|1|9|C|1254
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain PP
- Small ribosomal subunit protein uS19
- Chain QQ
- Small ribosomal subunit protein uS9
- Chain UU
- uS10
- Chain dd
- 40S ribosomal protein S29
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