HL_9Q2M_104

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9Q2M|1|9|A|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|G|1261
9Q2M|1|9|A|1262
9Q2M|1|9|C|1263
9Q2M|1|9|U|1264
9Q2M|1|9|C|1265
9Q2M|1|9|A|1266
9Q2M|1|9|A|1267
9Q2M|1|9|C|1268
9Q2M|1|9|A|1269
9Q2M|1|9|C|1270

Current chains

Chain 9

18S rRNA

Nearby chains

Chain ET

Transfer RNA; tRNA

Chain PT

P site Ala-tRNA

Chain QQ

Small ribosomal subunit protein uS9

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29