HL_9Q2O_102

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9Q2O|1|9|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|G|1054
9Q2O|1|9|A|1055
9Q2O|1|9|U|1056
9Q2O|1|9|C|1057
9Q2O|1|9|A|1058
9Q2O|1|9|G|1059
9Q2O|1|9|A|1060
9Q2O|1|9|U|1061
9Q2O|1|9|A|1062
9Q2O|1|9|C|1063
9Q2O|1|9|C|1064

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

NediV IRES

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain OO

Small ribosomal subunit protein uS11

Chain aa

eS26