HL_9Q2O_114

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9Q2O|1|9|C|1660, 9Q2O|1|9|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|G|1658
9Q2O|1|9|U|1659
9Q2O|1|9|C|1660
9Q2O|1|9|A|1661
9Q2O|1|9|U|1662
9Q2O|1|9|A|1663
9Q2O|1|9|A|1664
9Q2O|1|9|G|1665
9Q2O|1|9|C|1666

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

Small ribosomal subunit protein uS9

Chain TT

Small ribosomal subunit protein eS19

Chain UU

40S ribosomal protein S20

Chain dd

40S ribosomal protein S29