HL_9Q2T_057

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9Q2T|1|5|A|3876, 9Q2T|1|5|A|3877, 9Q2T|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q2T_057 not in the Motif Atlas

Homologous match to HL_9PN5_049

Geometric discrepancy: 0.1045

The information below is about HL_9PN5_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9Q2T|1|5|G|3873
9Q2T|1|5|G|3874
9Q2T|1|5|G|3875
9Q2T|1|5|A|3876
9Q2T|1|5|A|3877
9Q2T|1|5|C|3878
9Q2T|1|5|G|3879
9Q2T|1|5|G|3880
9Q2T|1|5|G|3881
9Q2T|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

Large ribosomal subunit protein eL32