HL_9Q2T_117
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAGUGGUUAG
- Length
- 10 nucleotides
- Bulged bases
- 9Q2T|1|PT|U|16, 9Q2T|1|PT|G|17, 9Q2T|1|PT|G|18, 9Q2T|1|PT|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q2T_117 not in the Motif Atlas
- Homologous match to HL_1N78_001
- Geometric discrepancy: 0.4663
- The information below is about HL_1N78_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9Q2T|1|PT|C|13
9Q2T|1|PT|A|14
9Q2T|1|PT|G|15
9Q2T|1|PT|U|16
9Q2T|1|PT|G|17
9Q2T|1|PT|G|18
9Q2T|1|PT|U|19
9Q2T|1|PT|U|20
9Q2T|1|PT|A|21
9Q2T|1|PT|G|22
Current chains
- Chain PT
- ala-tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L11
- Chain o
- eL42
Coloring options: