HL_9Q3Q_020

3D structure

PDB id

9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.01 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3Q_020 not in the Motif Atlas

Homologous match to HL_8B0X_051

Geometric discrepancy: 0.0383

The information below is about HL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9Q3Q|1|A|U|641
9Q3Q|1|A|U|642
9Q3Q|1|A|A|643
9Q3Q|1|A|A|644
9Q3Q|1|A|C|645
9Q3Q|1|A|U|646
9Q3Q|1|A|G|647

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L33

Chain 7

50S ribosomal protein L35