HL_9Q3R_035

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9Q3R|1|A|A|1453, 9Q3R|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Q3R_035 not in the Motif Atlas

Homologous match to HL_8B0X_064

Geometric discrepancy: 0.05

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9Q3R|1|A|C|1451
9Q3R|1|A|G|1452
9Q3R|1|A|A|1453
9Q3R|1|A|C|1454
9Q3R|1|A|G|1455
9Q3R|1|A|G|1456
9Q3R|1|A|U|1457
9Q3R|1|A|U|1458
9Q3R|1|A|G|1459

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17