HL_9Q3R_053
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 9Q3R|1|A|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Q3R_053 not in the Motif Atlas
- Homologous match to HL_8B0X_080
- Geometric discrepancy: 0.0405
- The information below is about HL_8B0X_080
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
9Q3R|1|A|C|2248
9Q3R|1|A|U|2249
9Q3R|1|A|G|2250
9Q3R|1|A|OMG|2251
9Q3R|1|A|G|2252
9Q3R|1|A|G|2253
9Q3R|1|A|C|2254
9Q3R|1|A|G|2255
9Q3R|1|A|G|2256
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain O
- Large ribosomal subunit protein uL16
- Chain Y
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
Coloring options: